Quantitative Methods

Decay times in turnover statistics of single enzymes

Martin Linden
The first passage times for enzymatic turnovers in nonequilibrium steady state display a statistical symmetry property related to nonequilibrium fluctuation theorems, which makes it possible to extract the chemical driving force from single molecule trajectories in nonequilibrium steady state. Below ... [Phys. Rev. E 78, 010901 (2008)] published Thu Jul 3, 2008.

Cellular Properties and Population Asymptotics in the Population Balance Equation

Tamar Friedlander and Naama Brenner
Proliferating cell populations at steady-state growth often exhibit broad protein distributions with exponential tails. The sources of this variation and its universality are of much theoretical interest. Here we address the problem by asymptotic analysis of the population balance equation. We show ... [Phys. Rev. Lett. 101, 018104 (2008)] published Thu Jul 3, 2008.

Publisher's Note: Entangled dynamics of a stiff polymer [Phys. Rev. E [bold 77], 060904 (2008)]

Felix Hofling, Tobias Munk, Erwin Frey, and Thomas Franosch
... [Phys. Rev. E 78, 019901 (2008)] published Wed Jul 2, 2008.

Multiscale Simulation of Nanobiological Flows

Maria Fyta, Simone Melchionna, Efthimios Kaxiras, and Sauro Succi
A new multiscale approach for simulating nanobiological flows uses concurrent coupling of constrained molecular dynamics for long biomolecules with a mesoscopic lattice Boltzmann treatment of solvent hydrodynamics. The approach is based on a simple scheme of space-time information exchange between t ... [Comput. Sci. Eng. 10, 10 (2008)] published Tue Jul 1, 2008.

A docking analysis of the statistical physics of protein–protein recognition
IOP http://syndication.iop.org

Min-oscillations in Escherichia coli induced by interactions of membrane-bound proteins
IOP http://syndication.iop.org

Environmental selection of the feed-forward loop circuit in gene-regulation networks
IOP http://syndication.iop.org

Protein–protein interactions: principles and predictions
IOP http://syndication.iop.org

Prediction of physical protein–protein interactions
IOP http://syndication.iop.org

Modeling tubular shapes in the inner mitochondrial membrane
IOP http://syndication.iop.org

Tracking single particles: a user-friendly quantitative evaluation
IOP http://syndication.iop.org

Reactive clusters on a membrane
IOP http://syndication.iop.org

Monte Carlo simulation of bifurcation in the intracellular viral kinetics
IOP http://syndication.iop.org

Noise characteristics of feed forward loops
IOP http://syndication.iop.org

Immunohistochemical pitfalls in the demonstration of insulin-degrading enzyme in normal and neoplastic human tissues. [arXiv:0705.0374v1]

ePrint arXiv http://arXiv.org/